Scaffold Ga0104988_10549

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10549
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17578
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (37.93%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006106	Metagenome / Metatranscriptome	381	Y
F010688	Metagenome / Metatranscriptome	300	Y
F016803	Metagenome / Metatranscriptome	244	Y
F025727	Metagenome / Metatranscriptome	200	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1054916	F006106	AGG	MAKGKTKEVQGGETLNVQGPGFVDKGVKRKIGRPLKILSADVTKKAIEAARLGIPLERIAIGCGFWNNGAGWQSYLARNPSFAADLEQARFDGEVELSSVVRQCGNGWQGSAWLLERTRGYVARASLEHTGKGGKELSISGSLLGAFGGQAK*
Ga0104988_1054922	F016803	AGAAGG	MISFLAKLRTAWTFSRHQVWVDPLPWRKEDAVALNNFFRSDTGKRFKDALLNTVLMQNASAITDRNHLQYSSGFAMGQASLVKVIEMMADQESITGQEDDPGSATNT*
Ga0104988_1054925	F010688	N/A	MRPKTATIMVIAVGPKGHHRAIGGAPSHSACGCEEADNNAPMISIPVEALSTDMEDGQQATPEVGDEVLLDDVRGILKKLQNGEAYVEIKSVNGMPAEYEKTGEDAMESKQPMDEKGMREMVSKYDSEMES*
Ga0104988_105496	F025727	N/A	MSRHSFPLVESIKVVRLSEGRTIRVLRDRTKDNLKVIHGDGDIHLTCVAQAHDPIEMIKTLAKLEDVRSVELIDAKGNGIIIHKQK*