Scaffold Ga0104988_10530

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10530
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 17007
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (73.53%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040102	Metagenome	162	Y
F062764	Metagenome	130	Y
F080056	Metagenome	115	Y
F086829	Metagenome	110	Y
F099275	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1053012	F086829	AGGAG	MATKKPAYLKEKTKKDQALAVAQSWLRASAASALALYLSGITDPKVLANAFLAGLLGPLVKALQPNEKEFGIKK*
Ga0104988_1053014	F080056	N/A	MSDYKDGFTDGYIFAKEELVDNLSEIEGLDSWTIDQICNMIENNKL*
Ga0104988_1053020	F062764	GGA	MKKQYEPVIVKSFWRKHTEEELNAMSDEQVMQLVDSHVETFMDAWQKRNKGKDFPDLAKGTIADVRNKRTNISKAPKIVKS*
Ga0104988_1053032	F040102	AGG	MQCAVCKFNVESGQICKKCYSSLKFALTELPELQQGAAGFVTPGRSGSGSVSTERSIGFNVNALDYSMGKELLGLLHKYEALIRRGRSLTPPALLKREATVEKEVAATVSFHLAHLEWTVQQDWLEDFAGQVKELHSKGLACNKRFIEQPRRIPCPTDECRAHIVIDIENLLAGVTCHKCRTSWTLYRLLALAMNNPNRTFWLDVDAICLWMNITKIDLNKIVRDHKVPMKNGLYDISAIAKARSLV*
Ga0104988_1053033	F099275	N/A	MSIGPVNVQLDTDERLSFDAIDSLLNRGAATVLTLFDTHLGSVVKYENYDNDIDCDECSSITEELD*