Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10522 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10522 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	16905
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (38.71%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

16905

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (38.71%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007260	Metagenome / Metatranscriptome	354	N
F010835	Metagenome / Metatranscriptome	298	N
F013412	Metagenome / Metatranscriptome	271	N
F013879	Metagenome / Metatranscriptome	267	N
F017997	Metagenome / Metatranscriptome	237	Y
F023575	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1052210	F013412	GGAGG	MRHLWARGFGRLHSDAEVIHSDDGKRFLLAVVEFEKRTLANGKPYAQRVTFRSFDLDDIEAVERLTTGTHIMFDGDCDALAEKSATGWWYANPRITGRIHEIIPPHED*
Ga0104988_1052221	F023575	N/A	MAVSKGLALVYGARGTIKIYTIDGTGALVALTTGTITTMESYDITHEADVEQIKNSSGEVVAQVSANERISLNVTFIPSADTFANAKIAASLPKVNGYAEIAGSDGPTVGGVSLDGTYVYSGGGSIKMTNSGKAMVTITVTKYPSLAGNAAVYTLATP*
Ga0104988_1052222	F010835	GGAG	MNAVALRTERALVDWLAAQDWSASPLGTPTCLTSYGHGAFADPDLEDQMPDFPRIVVRSSTAVPVHPIDRTCEVDITATLQLSADDTPEYNVLATVAAFEDILQPLFVDDNISELNAEESNPSGGFVAYFATPTDFGINDTSERARTFSRSMRIFAAANAITT*
Ga0104988_1052223	F013879	N/A	MTPLIVVDVSRFSAAWKEYLRLTSRALPEVINSRTFYMMLRMYCLLPPKSPQASRNKVLDYLDRYVVKLRKKSRKTGKYIGRNRALRVVHLIAQAKNAKAGNEGLYGPTMRKAAGKLRRRAAGSVGYLKSAVTKAIKKLSPSFQQFGGTRRAKAGSAQVRIVAGNQALINLANEYGLPQENVSMHRGSSAYSYWAKAGFNPSSHVRLNIGVADNQTGRVNTIYAKAMQQAYNDEARELEDHIRAKLQEAAEPLEKYGVTVQ*
Ga0104988_1052224	F007260	N/A	VNLIATSLQLGMSVLQSAMGNPSFLWQGVLVRCLPAAITDANSVIAGGFQDNIQARILVKLADWRLADSTLVTVDASVWSCDVGSSPDRLLQESGGLLLQENTDRLLLTFGRMMPVVGRLVTYDGKQLRIMSAKRDGSGAYYALELGAKTK*
Ga0104988_1052226	F017997	N/A	VNIIEQIVTAVLKWLTGLAKTEPTVEDAKPDKELKAKLLDRIDRAGG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10522

Overview

Ecosystem & Geography

Associated Families

Sequences