Scaffold Ga0104988_10493

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10493
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16269
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082667	Metagenome	113	N
F094947	Metagenome / Metatranscriptome	105	N
F098695	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1049312	F082667	AGGA	MYQTTPEQAKTEASLAKKGFRFSSWIPFQPNAHGQPSEGTEHMGTIVMVKRVTRFSTEYREIEPDGSIN*
Ga0104988_104937	F098695	N/A	MIVDKISSQAGMARFASFTYQSKSTGEVARYTIQLGFSYRNCLEKSKLALEIESAALNGLDKQAAEELLNSFVASLNGTQENYTKQEIYADVTDSSGKTVQGIKRNINDNSLQIFGLLHSKVQITPPTIEDKPVKSRPLTIAKNKLRKDLPVGKFREFALENLNVVKLNGETLELA*
Ga0104988_104938	F094947	N/A	MNYPVKNALRQLVCKVYETATKDKQTITTVSLPGDCWEFEHFINDNFNFRKWFGNPIKQLKSYCFERNTLCYQTELNYAKPLTDTGNFEYLNEEINETPMLRTDSESVFSWFDFCGNPTFFNLDYCSNPEARQTHLFTFNLAWRYSDNIPTDILIDSKQYENKEEAILKYFQKLIDSTYQSYRYQIVFAITYVSNHAPMILICISNDPAIILADFGICKTSHRKTEKLPPPPELIQVPAQDINKQEVYADLLSGKSDEEVMNKHSLKRMQVAAFKAWLTMRGEW*