Scaffold Ga0104988_10483

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10483
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16033
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (18.75%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019140	Metagenome / Metatranscriptome	231	N
F027518	Metagenome / Metatranscriptome	194	N
F039140	Metagenome / Metatranscriptome	164	Y
F041764	Metagenome / Metatranscriptome	159	N
F049635	Metagenome / Metatranscriptome	146	N
F091602	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1048312	F027518	N/A	MNTEKEIALIHEELQELNKKIDRIYNVLIGDNEMKIEGLVSKVQKHDKYINNQRLQVARLGGIATAAGVVGGLIVQFILKFL*
Ga0104988_1048313	F039140	N/A	MKDKLKAWLNELVTSSTKVSSKRIVAIFVTINLIVLSYIATFTYYICPIAMFDTLALLTGGLFGGTVIERFTKQKNGETNGSEKNSSGDLQ*
Ga0104988_1048317	F019140	N/A	MKQTPLYESLKMTYDREREIVNSIATYFQQAKPVGDILLELSQRKDMNAKEKVYLALMIGTMMTRNDAEK*
Ga0104988_1048327	F091602	N/A	MKSDLTFCPNCDKELLGERVDFVLQDQQLEDWDSAYELIDSEGEINLCSDCHEWDSADDDAKGEGWD*
Ga0104988_1048329	F049635	N/A	MNKQIYSTPFGRLVKSNFKTLNNFKTALRISDPTARLYVAHPERMRIKDFNNICLHTGLSREEVFSTFTPTKLINEEND*
Ga0104988_104833	F041764	N/A	MNIEAGGFLKVELFNDDANLFLLALTKITKEKGAMGFKTYGLSEDEMKVLNAILDNLG*