Scaffold Ga0104988_10475

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10475
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15866
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F016149	Metagenome / Metatranscriptome	249	Y
F051715	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_104753	F051715	N/A	MLGGQRHEDFVYPDDQWYYFQFADRFGWTPDQVDDLPAATADWLISIAATYESAKVERMKE*
Ga0104988_104757	F002722	AGGA	MAGRTGVRATIYSFLSSPPITNLNQIFTSFPKRIDFNVNATAGSASRAAAIIFIAAERESRIAIGGATNGIKRIDYTIILQIYQHSFVRNAEDAMTSFDTLIDAIKTRLRSDHRFGDTNGTLVWQGAEPAITTRYGEVSTSEEGMSETYAEVEFEVTEMIHA*
Ga0104988_104759	F016149	AGGA	MARLVAPDKGVRETEVGGRLYKPDRGGIYNVESASAARAMKSEGFFEAALNPVDSKDSQRGFTCVQCGFGSWFRKCSRCGSENLDSQRDGE*