Scaffold Ga0104988_10473

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10473
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15863
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002934	Metagenome / Metatranscriptome	519	Y
F004050	Metagenome / Metatranscriptome	455	Y
F046092	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1047310	F002934	AGGCGG	MNMKHPAIISIGAFLAVWGTTSNFALDYRSILGAVVAGVFGYATPKK*
Ga0104988_104733	F046092	AGG	VGKLYFRNQDDEWEQFPTDEQLQAAEKAAYDLQLLGFAIICQLCNTPPTVAQIKARALMNEWKCDKCHTINSAGKA*
Ga0104988_104738	F004050	N/A	MAKKKVIDLDTYNALDAYAISMHEFYKSLRKAGFAVDLCLAIIVERSAYPDWILPDLPNRIDHIPYEDDEDDD*