Scaffold Ga0104988_10467

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10467
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15794
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (13.33%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F003267	Metagenome / Metatranscriptome	496	N
F003459	Metagenome	485	N
F004837	Metagenome / Metatranscriptome	421	Y
F005845	Metagenome / Metatranscriptome	388	Y
F011581	Metagenome / Metatranscriptome	289	N
F012656	Metagenome / Metatranscriptome	278	N
F035287	Metagenome / Metatranscriptome	172	N
F044982	Metagenome	153	N
F046337	Metagenome / Metatranscriptome	151	N
F098895	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_104671	F044982	GGA	MEFDVFVGGSGKKLTDLQKEALANFGVSLADGAIENKSYALVTKWLEGVVKLAKQNLANANAIASNALAQSITVEPITLTDSSFVVAIKANDYWKFVDLGVKGTQKSNRAPNSPFRFKGNPIPIRPLQEWIAFKGIPLEGRDKKAANRSFAINIARKISREGLRATKFMSNAVTEDMVAVLTENIAEVLGKSISVATVR*
Ga0104988_1046711	F004837	N/A	MTQAEYLLAQKHRHYWEQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALPYIYQEADQFAQANHHTVTHAINNPNP*
Ga0104988_1046716	F046337	N/A	MEEVFLALADGNYAVGWLTKGQITFTNIHGEAWWTHEVAAWMYPNPPKP*
Ga0104988_1046717	F005845	N/A	MKPTPTDFRRWQIHIRKECVSCSRPDRSETITPWRVNWTLLGRILQAKNA*
Ga0104988_1046723	F035287	N/A	MIRPAPPKKKKGVQIVGRVAGVNAALLLLEKPYRATELAEVLGIHIRIMYRILNDLRATGHLYSHRCHYWFDPKKNNDLQHLIPVKDPYL*
Ga0104988_1046724	F003459	N/A	MNHLVTIPKSDISKADIADIAANLIHRIEEGEVNPIAAHVRLKAVVKAVEQVLKATEQTVWDEAEKNGKTFSAFGADIQLKEGAITPDYSHDQQWSDLQASMKVREEQLKMAFRNAGKMTVIDEATGEVVPVCPAKGTKPSISVTFKG*
Ga0104988_1046725	F098895	N/A	MTLLEKCNADVYKAILDIKQESPEIGEKLIFILQKHESPFDLTCSEMLWFSANLPYKIWNCKIHTFFLLFESQQTTEMR*
Ga0104988_1046729	F011581	AGG	MTYHSTRPAKALTNALERLMIAISAQELEENHVLLCEYRRACDLLGYDPLKAQWNNVEGVNASGLPNDEPHTVDYYPLLNPEE*
Ga0104988_104673	F000557	N/A	MKLQDLTIDQFQRIAALELSPALNDADKRLGVVAIVEGVDVAIVRDMPAASLTKRYKAIIKEWNELPALAYKRKFKAGGKWWIPTVFTDELTAGQLIDLMEMNTTDERQLVQNLHRIMATLCREASWFGWFHKKYDGASHAERAELMKKHAKIGDVWGVVSFFLLSSESYLQILSDYSKHLTKKAQDQ*
Ga0104988_104676	F003267	N/A	MKLIHYYHIYCGGGGQWQLIMNQHMMALCNYGLIERLDEIRVGIVGPPEQRKAVKEILDNSLIKDKVKVVVTRTNAWEQATLTEMYKASQDEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNVVAWERCLAELEKVDCVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPAPDKFIITF*
Ga0104988_104679	F012656	AGG	MDSLMMVITTLCDCIGAVEESNAPNAFAVKMKIVDKIDN*