Scaffold Ga0104988_10448

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10448
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15427
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F011391	Metagenome / Metatranscriptome	291	Y
F021759	Metagenome	217	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1044815	F011391	N/A	MAKYQVVEGFTVLDKQYPATIDGEDIDHLDSLLQSGRIVPVADKSTSKADKAGDK*
Ga0104988_104482	F021759	AGAAGG	MDAGYATVLAAAVATFGGIIIALMQLKGFRDENRADHAVVQKRLDNLIDMVGKQGARLTSHLDWHVTKEPSGSLTKTKQVATRKKK*
Ga0104988_104484	F003378	GGAG	MVPEVKIKQNPTIAKFLDLGQRLLSLFLANALPAITTGAVIGISVGKAAIMAGAMAVIKVVSVLAEASVDGELTSEEIKQAFSGAKKK*