Scaffold Ga0104988_10447

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10447
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15393
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (100.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003067	Metagenome / Metatranscriptome	509	Y
F006789	Metagenome / Metatranscriptome	364	Y
F007027	Metagenome	359	Y
F020906	Metagenome	221	Y
F046904	Metagenome	150	N
F090094	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1044710	F003067	AGG	MTQAQAYVALLLGIATLATFMAGLVRHLVKYYLAELRPDGNGGHNLRGRVERIEVRVDKIYEMLIEDRLAK*
Ga0104988_1044712	F020906	AGG	MMPTSAQVSVGTTPTLLVASTGFDQTVWLHNSGGGIVYLGDSSVTTANGYKLDNGDKMQLLVGDHEGLYAITTAGTNTVGVLKQIN*
Ga0104988_1044721	F006789	GGAG	MALTDEEKAFLIKIGQELPVEVKETKTKDTPTEKVEE*
Ga0104988_104475	F007027	GGA	MDSIRFECRSCKKITEQIERIVTDNLPPNVKVLQCKVCSKMSVCLLVDFTEATQ*
Ga0104988_104477	F090094	AGG	MSDRYELINLQTMTGKLFIEGELAAEYKVETCDRCAKVSQLDQFGYQKSDPVENVIWFCKDCR*
Ga0104988_104479	F046904	AGG	MNSLDLIVVGMVCLFMGLFIYAAYEMGYKVGLGEGYLRGRNIAKALRESEVAK*