Scaffold Ga0104988_10420

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10420
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14868
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (83.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F011646	Metagenome / Metatranscriptome	288	Y
F029021	Metagenome	189	Y
F053128	Metagenome	141	N
F065721	Metagenome / Metatranscriptome	127	Y
F067515	Metagenome	125	Y
F082173	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1042010	F006618	AGGAG	MSKMKQHLEEQVVISHSSEESTGWKRYISFDYQGNNYELTLYWEEFNGYDTYWREPDTTPNWVVEWDSEAHKGMSFEHYLDDLTWEMNK*
Ga0104988_1042011	F053128	GGAG	MKGYFVIDKQGTGWKEGYLWNSIKEIADSIRDYDDYRELEISNLTHSQVCKLWDFEYHRITPANCEKYGVNPSQLTREIKI*
Ga0104988_1042013	F029021	AGAAGG	MNICQFCGWEIARVDWYHRYNSKLICDNCVMDTMSEREKEESK*
Ga0104988_1042016	F011646	AGAAGG	MSNVLELRNGSLKRIIFYEVADPQNIAVWGGESALEALKWYRNSPTGSRIYVQEWLTDEEDAKQVSSQIEITPIVLSTIANCMDRWV*
Ga0104988_104202	F067515	AGGA	VKSYYTNETLKSTAQDIKKDFEIGGATWEGVALEIARLQLSLKEFKKLGLDIDKGIDYGTWDGSYCASEKDITLFDPKCCDHDYESGCPCCLGDCDDCTDEQNIQLI*
Ga0104988_104203	F082173	GAG	MAKQFKTTTLLADDSGAVWVEAQLSEAQVKRIIKGYERAGVSLTAYGSPNQVMAQVRELEGAF*
Ga0104988_104207	F065721	AGGAG	MTKYIANENGDWWEVVEGESLYLIDTEWENIASKMEEEEVSPNDDKFERFIWRYGSPVSVDMEGARV*