Scaffold Ga0104988_10411

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10411
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14765
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (91.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001477	Metagenome / Metatranscriptome	687	Y
F003456	Metagenome / Metatranscriptome	485	Y
F003784	Metagenome	468	Y
F083901	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1041113	F003784	GGA	MYDNDRERVGHNATDFAAYGLSHLAAGQSNTTDTHTPPTNPLADHPAVAGYRAVGVSTEDLTSFIEAFASLRAMRVKGVGHSQYAIAQGQKFESFTTADTIRELIEELADASNYIDFLAIKLLNIQHTIDLVLPDCE*
Ga0104988_1041122	F083901	GGAGG	MVDDTMRRSTTAKKKAVRDRNYRRARDRALVRLAHLYPDTYKQLLEIEKAFDEQEGKKWIGIDGLTNLSVGTHTRANGTPPFGDPADAGEDEGNYGGEA*
Ga0104988_1041123	F001477	AGGGGG	VSNIYTIHPKKSPLILLYEVVDEDGRAEWGGHSAEHCMQWLSLAPTGSRVLVSGWESDEEDAHLVGQSLDITDIIKAASL*
Ga0104988_104119	F003456	GAG	MKWLRKAGVMAERLSKAGAKDEGDIVTVIAGETYILELKNRATLSLPEFWREAQVEALNYSKARGLGEVPLSYVIVKRRNASIDQAWVIQDLAQWLKEKQ*