Scaffold Ga0104988_10408

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10408
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14733
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006740	Metagenome	365	Y
F013502	Metagenome / Metatranscriptome	270	N
F036595	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1040829	F013502	N/A	QSGNVVEFRQDYDIIEMRRHPQYTEVDTSAVVEVEKVDGTRQTLTLKKPMGRPRKEQLL*
Ga0104988_104084	F006740	AGGAG	MPTFESWSHENLAKFAQEAYIKMQQQQDYIEQLQNDLKDAINAYRSLIK*
Ga0104988_104089	F036595	AGG	MIEFLKQLMIARVNRPKPSVEEVEVQVWAFVVKSITIMVLGIAFGVLYLIGFEKQDPELAPIDSVFLEILKAIAFMGVGTMGGISGRKASTAIAKAIVGDQNESK*