Scaffold Ga0104988_10406

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10406
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14727
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (27.03%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006260	Metagenome / Metatranscriptome	377	Y
F010397	Metagenome / Metatranscriptome	304	Y
F018368	Metagenome / Metatranscriptome	235	N
F038202	Metagenome / Metatranscriptome	166	N
F085697	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1040614	F038202	N/A	MKIKVTNIVYDTDGESIPDLPTEMILNVDGNIDIESEIADAISDNTGWCVEGYNYEIL*
Ga0104988_1040619	F018368	N/A	MTLVTLTTKGQKISNQIVSADVIEITQGPFSFAALTESILTEEDKIVIRYEVDGEYCNHEITNDMLNNANIVDGQIEFAWGTQLSISLYKLTPVNAVE*
Ga0104988_1040631	F006260	N/A	MPKPQNKVLIQHDDLKFDGKSITIPSYWIDSLCEYIKDYKIEGEMEADIEDYKAFQSFLWDVQEYKNKGN*
Ga0104988_1040633	F010397	N/A	MNISQFERGKPVVTMHKINELIKRIDDEKYKTEKLYKDRVESLNAIHQLLIDMKESFKRGE*
Ga0104988_104067	F085697	GAG	MKIELKITMEELIELRIALNNSERRIKELMSLKHEDWHKLYELDIQSVEKGKQALKQIVQRN*