Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10386 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10386 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	14471
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (66.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

14471

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (66.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003213	Metagenome	500	Y
F011830	Metagenome / Metatranscriptome	286	Y
F013413	Metagenome	271	N
F032279	Metagenome	180	Y
F092026	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1038616	F003213	N/A	MNNKKINKSHRQIGDQTTKGGLLGIFIYVLSRNNVDPVLIGLLVPVVASVLAWISTKIGDPDLACMFIPDDKDKQ*
Ga0104988_1038618	F032279	GAG	MPLIIKLIIAFALSAITVGVSQIPQPTPDMSDTPTDAPYALIGGLGQYQADLWRYVPPVTTTVPAQPVYKHGDCSWLPALALQAGWSAEQIPQLTKYALRESGCCPNRAGGDMVDKNCNITGVSEWSHRSDSGLLQINGVHWLPTHKNYDGLICKQMRICTQAPLLDALTNLRAARLIYSKVGWSAWGN*
Ga0104988_1038619	F013413	AGG	MTENEYDEVFAMQMEKQHEQTMARMREFKMIGEQISKMPVVSERTLEVEVRYLMGIISELEQRCKDLESEVRRLDQLVHRATN*
Ga0104988_103864	F011830	AGGCGG	MTTYNTASKQLLSNYACISTLEPTEIIVGQSITVASLGAPFNGTFTVLEMPAFLLSGVDSTTGEFQYDITQPVPNQLLFACTGSNVEFVKIFTGTVAYTQTCTWVTAAQILTYLGIATATADDTTFVTQCASAANVFCYRRRQECGYFDSLTTSPSGDVTLATIMYGSALYRQRGGISDFASFDGMSQGSTNGLSPIVKQLLGIDRPQVA*
Ga0104988_103868	F092026	GGA	MRVKLKVEYNNGTPAVELTTNMYVVCEWEKLENRKVSDGKGIGYSDLCCWAYLILQVRGDTLPDTWRKWVKANPDLEINAVDQTDPNPTALAVTEGS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10386

Overview

Ecosystem & Geography

Associated Families

Sequences