Scaffold Ga0104988_10367

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10367
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14240
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (87.50%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005558	Metagenome	396	Y
F009331	Metagenome / Metatranscriptome	319	Y
F016642	Metagenome	245	N
F020863	Metagenome	221	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F040479	Metagenome	161	Y
F055450	Metagenome / Metatranscriptome	138	Y
F068766	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1036710	F009331	AGGAG	MICQNCMKGGEENSAAHYKRSAHWHEKCDYKGCVCQHKTGPGYVKRDGSKVPLMQTQSP*
Ga0104988_1036714	F040479	GGA	VNPASTTLLAQETLRANQEARLTELLNSLESVVDNLNFKSFTVYDTLMLATENLRVALSNIATEEAGTDTL*
Ga0104988_1036715	F055450	GGAGG	METENKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLDGNTIPVVGVRIRTADGRGAPVLKDSSNEGTNQGNDGGEA*
Ga0104988_1036717	F068766	AGGAGG	MTENVVGFHPKNKLVNFYEIATAEGNAVWGGEDPHSAVQWLRQSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVFAVMAGAQ*
Ga0104988_1036719	F023834	GGAGG	MSEPTVDYWRAKAELCRDLALAQIIDGDEKMEKEAGMNLMRMVHALSMVDTFNEGGSDD*
Ga0104988_1036721	F026864	AGGAGG	MSEQDKMAQFVFTVVVIPDNKRYEVELWDFAGAKPDLIAAGEGTNWRTALGEALSRIELPTDKVEKTINDVIKEGVEDGAL*
Ga0104988_1036722	F005558	AGGAGG	MTTDQDSMSWSELAELTHATQIERFNWCMCEDNEGNENPYNDCPKEAE*
Ga0104988_1036724	F020863	AGGAGG	MQTTIEEVRSLVAALEKLIEPLFEGEVVEDAPYESMKRPHLVLQEGSKTYGRAWRVHFTGGSHYGSGHCEPRGFSDYLGGSKAEAAHTLRKLIAGIRTGLLIAEKKEVKS*
Ga0104988_103679	F016642	GAG	MLATERWLAKYGSVDRPNYAEGKKNGYLEHELLANVRANVSEWAVASVTDTAWNVPWYPNELHPRRAKLPDVGVNFEVRTLRTRDSVPFWNKDEGKIIVGTKILDEDYYSQVEVYGWCNPAEYATSQYRDETISGWRVPVTELKEFK*