Scaffold Ga0104988_10364

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10364
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14112
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (32.56%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Associated Families: 13

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F016800	Metagenome / Metatranscriptome	244	Y
F027828	Metagenome / Metatranscriptome	193	Y
F037191	Metagenome / Metatranscriptome	168	Y
F048940	Metagenome / Metatranscriptome	147	Y
F054636	Metagenome / Metatranscriptome	139	Y
F058096	Metagenome / Metatranscriptome	135	Y
F059435	Metagenome / Metatranscriptome	134	Y
F061794	Metagenome / Metatranscriptome	131	Y
F081258	Metagenome / Metatranscriptome	114	Y
F082582	Metagenome / Metatranscriptome	113	Y
F084145	Metagenome / Metatranscriptome	112	Y
F091925	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1036410	F027828	GGA	MQTLIDKVLMTEELLNEKQLTALRDMLYVYKELQSEVHNYPPEDTLFTQTQFEIFDIFDIK*
Ga0104988_1036411	F091925	N/A	MTSISFTSGELLDIISALEIKEDRAYDSGDRNLAAYYMNLGNQFQRIYDRLQEFVPENRVANLVLAVN*
Ga0104988_1036413	F016800	AGGA	MLDAYTDYPIEGLGDTEFEKAPIRKCTILTWDRNKYCDVLVYFVDEDGDLRGCITNFKQWYLYKNEARLDDGVQFTDDELKTLSWTY*
Ga0104988_1036424	F082582	AGG	VEGVRPTHKRPNSILIKMTAVVDFSKDVMLGMLRKGQTGTQILDILNVLVPEQTELTREQVCDDLGIADCPENDDEIARAMSAV*
Ga0104988_1036425	F084145	N/A	MFVICPASFDLVDAEWFDNVYEAKEEALDWSVELAGRNVIVYEALEDDDGGAYDFKPVSSICA*
Ga0104988_1036427	F037191	N/A	MTVAEWIEKLKEFPLDQEVKITDGYKCQFYQGDFEFQLFEDVDGSTFVDIGIGGFDEEDKTDNR*
Ga0104988_103643	F013631	N/A	MIVSEVFHYTTSRWDWQDCNVNQMWIEEIEESPDCYRYVAVAYNPRKDASMVMSEPRCYADTLNWVRSWCRSFCILPDFSIAV*
Ga0104988_1036430	F058096	GAG	MNAQLSIDECKVMWVVGALERLATLGLIGPDVPLKLSADAVEDYIQIDEHRELLFESDFEIASIFTELANDEAENTNPDDIKPIIELLLEYKNNRTEIVKYALSHQLI*
Ga0104988_1036434	F048940	N/A	MMNEVQSQEMTTAQRMEKQFFISFIRLVDEVQGKQKLPSQIQSNRKSAWVKQTQNPKQKKDALARV*
Ga0104988_1036441	F054636	N/A	MTIKLEIDDYEKDLLIDTIQHRLDTDKILVINNNLKEELEDLLRKVEEDEYV*
Ga0104988_1036442	F059435	GGA	MNTYNISVNGNEILSQVPQNDLQENLKLIRGLVWTSGGNDEDIIVSLNKNEGHCNE*
Ga0104988_103645	F081258	N/A	MTFTFPRLSGGVYHIQKDSNTLGFIRKVNASKWMVVDIVDTPQHVTKTLKEAKDACINLIIFESVDNTPEDVYNDSVEVDEINSSLNKVLEGSLKTYRQIPGTDEFEEVCPSEFGFAEPTLEPIMF*
Ga0104988_103648	F061794	N/A	MPFTKKFPQSGETIHIRVPKCYAELIEELMVTLDARFDVEKGKHLLHKFIHNLT*