Scaffold Ga0104988_10356

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10356
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13934
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019968	Metagenome / Metatranscriptome	226	Y
F022646	Metagenome	213	N
F037125	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1035613	F037125	N/A	MIDASMRGSHDLERIIYELRKKIDILNEEIQAKEIYIKKLENDLDKSVRSDN*
Ga0104988_1035624	F022646	N/A	VQIRKANIITSVKHQKFVASFPCVVCGNDTQVQACHIRSIPKLGNVGKGIRDCKFLIPMCFTCHSLQHQIGELEFFEKYNINPILISMKLASISPCNKINQAKQEGAYNGKLDYREHIRINKKDSLR*
Ga0104988_1035628	F019968	GGA	MRNTGVICSMSYYELKLMTAVLSRILLDNEIRGEHTKKRIYSLIGK