Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10349 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10349 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	13870
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (40.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13870

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (40.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F033771	Metagenome	176	N
F045056	Metagenome	153	N
F063621	Metagenome	129	N
F067885	Metagenome	125	N
F090300	Metagenome	108	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1034915	F033771	N/A	MSLLNKITVDQFQRIVSIEANAIYTTSDKKIGVIAVLDGIPIEQVKKMTIAEVNKRYGEINAASKSLSSLAAKRHAKVAGKWYQFEWFIDEISAGQLVELYSYDMSSEQGVIDNLHLILATLSRECRVWKWWPKAYDGKGHKQRAEAMLQMTMGDVWGYAAFFLQLSEPLLTIMRRSLTDQQKTTTTAKA*
Ga0104988_1034917	F045056	N/A	MKFSAKLEGDVLNVGTDVTKEFSLSQSPDVNAALIRWMQDVIKLTVEGIERVDAKATLNLRQSVGFAELPVEQKVAQVAMEMASYWKFVEYGVNGVRVNRGAPFSFRSIYPSASHVAAIRKWAIDKALGIPAEEIDAAAYNIAKSIKRRGIKGRPFLNPVLTEAKMDELVSSIAQVVGKEISISINV*
Ga0104988_1034918	F063621	N/A	MSITIISALPSLLPVGNSDVVVVSSNNTASANFRYVCDVSGSLSSARLKCDKLPTTNNGFFGVSKVVETLIAPKIPQLTSGWQDGGYAVNTNLTLREEFGSPPTVATGGTASASLIAWQAAFRQQDYAAFVPDNYQAGFGSANQITVSNRPTAYSMASGQHDFIGLILKSGSVPVAEIEYYDKTSLERTFTVSGSSNISNYFNLGPLGLYNLTDMQTSDGDDGTKNFPPVGSTYTVTLYNDDVAVDKDFTPTYTITIDNCQRYNDLRIFFRNMYGGVDGYTFTRMNRQRVDVDRKTYGYNASVYGDDVYDKQWSVTYRDTYTLNSDWLTDAEFTWLQEMIYSPECWIQLGTQLVPVVVQTNTYNVRKRVVDKLQQISVDVQVGYENTAL*
Ga0104988_103495	F090300	N/A	MNRYNVLPAWYYRYAKCKPLTCLTCLAFWWGVVLTITASNLPWLLAIPVGLSAAGLTVLTIKLSEK*
Ga0104988_103496	F067885	GGA	MTLDEAMQVLSVKHKLDGYYASQTMSLSPGEVSMLENVANANGYGRTNWWCGSCAVSRLQEMMADAMDARARLSVE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10349

Overview

Ecosystem & Geography

Associated Families

Sequences