Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10336 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10336 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	13648
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (70.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13648

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (70.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002644	Metagenome / Metatranscriptome	540	Y
F011389	Metagenome / Metatranscriptome	291	Y
F011486	Metagenome	290	Y
F011830	Metagenome / Metatranscriptome	286	Y
F064652	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1033615	F064652	AGGA	MTKYIVTSNRLVGYEPGDVIDGNDLDGANIDALIEGGHISTQSERKSAKTKTIEIED*
Ga0104988_1033616	F011389	AGG	MPVAFTDLFNEALDDLTATLVAVTGMPAVVNDPRNMQPPCVFIDAPSFDAWNYNIVKLMFPVKIVTLGPANLDAQRSLLNIMSKVLAANIAVTDGRPTSTLIAGVEYPSYEVVANVQAQTA*
Ga0104988_1033617	F011830	GGCGG	MATYNTASKQLLDNYACVSTLEPTDITVGQSVTVGSLGAPFNGTFTVLALPQYLYTGVDAETGEFLYDTNVAIPNQILYACTGNAVEFVAIYTGTVTYTQTCTWITASDIEDWIGIGTATAGDTTFLTICAAAANSFCYRRRQEVGYFDNLTTVPSQDVKLATVMYGGALYRQRGSITDFASFDGMSTGSTNGLSPLVKQLLGVDRPQVA*
Ga0104988_103363	F002644	AGG	MTGNINPTTDPQLRALMQVMNEITANRVPFYEPHELAARSTLRALQHEIDDRNVLDDGELIDTLNQARIEIKYLCSIITDLLERVKQRDVEIGIKQLKLNENEVEIQRLENMVHRAN*
Ga0104988_103365	F011486	N/A	MTKPYIVTKQPVVTKPLMGTSEWARQATVHSEGSLWNNGTFVVRDVRGKPGIISNHARGLAMDLSYRWQAQKNLGRQDGRKVSLAFIVKLLDNADALGIQLVIDYALRRSWKCDRGTWQAGNFEQGDWYHIEIDPTIANDAAMAKACWVSVFGVSPQNKPQSV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10336

Overview

Ecosystem & Geography

Associated Families

Sequences