Scaffold Ga0104988_10315

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10315
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13388
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (52.17%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008616	Metagenome / Metatranscriptome	330	Y
F008811	Metagenome / Metatranscriptome	327	N
F011755	Metagenome	287	Y
F012447	Metagenome	280	Y
F013987	Metagenome	266	Y
F014609	Metagenome	261	Y
F018353	Metagenome	235	N
F030061	Metagenome	186	N
F082594	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1031510	F014609	N/A	MINELIGVIGLLITILVLVIKATSEISKMKSQLFPNGGSSLSDKVTRLQIDVVKIRSTIDSISAELGKPKRKR*
Ga0104988_1031511	F018353	N/A	MSKPKAKKQSIELPDVMASELVRIVNTAHEDGKLIVGFVACLELFDGKKKTVKIVANQDMPQHSVFGIINYAAEKYQFTVAPDEDEDDDFYDPEWFHGQ*
Ga0104988_1031518	F012447	GAG	MAKAISLIPVDKDYKGLLRAFGKMDDIAKNDMKKIAQELAERGAAYAEGSASRAPYNPKQAVAVAESIKVSKSDKAPSFSIGGRGKVGSSAFSAGYVIMGSEFGSKQYKQFPKRSPSQGRGNRGWWLYPAMSRFQPIIAKEWLAGYEKVRDAWVGRI*
Ga0104988_1031519	F008616	AGG	MLKLKLRWEIETGEVYEEWTRPNELAQAEKELYNNRSIIKILTEESSPSNQLLLFLGHKIQQRVTKKMENFDTWKSTITDIAAVDFETANFTKPDQSGV*
Ga0104988_1031520	F008811	AGG	MATTVLSGRQLILKIATVNYSEQILNSALNFATERLTFDTLAGKAFKYIDSNVTLDMTFLNDAGETVSLYKALWNATESAPDTVLAFELTLQTGVTMTGSVLPQYPSITGSGADAQQCSVSLQVVGIPTEDLTK*
Ga0104988_1031521	F030061	N/A	MALSDLRSTLKTALTSNTNYSCYDHVPEIIIPPACLILASDPYLEPMVIGNSKNYYVRLTLEIVSTTYSNPSALKNLEDDIETILGLIPLNYLVLSVSSPRIRQTNSTDLLTAEIQLQTAYTG*
Ga0104988_103153	F013987	AGGA	MGLREEKQRILPALDKATEEAQRQGFITELDLAGIAALFTIAGVLDSGMLKPMEEIKYLSQLQSGLDKYGLSLFGRKEKPELEVGEDILDDLRKLNPENSDHSTSSPN*
Ga0104988_103155	F011755	GAG	MSVNMSNAIYLHYHYDYDNSKEILCRDAKCYQKRLEDQKNLEEYQDQIDRDLALKENLLHIENCLQDPRIDDYR*
Ga0104988_103157	F082594	AGGGGG	MKPQEVYKLEQILRLSISQDLLSKASNFHNRDDMEEARKIVEKKH*