Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10296 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10296 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	13098
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (15.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13098

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (15.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F006105	Metagenome / Metatranscriptome	381	Y
F007748	Metagenome / Metatranscriptome	345	N
F009057	Metagenome / Metatranscriptome	323	Y
F011581	Metagenome / Metatranscriptome	289	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1029611	F000847	N/A	MSWIKIKQALLALANAHPQVNSFGTGDPLAVGTDNTINLRTPSRERIVYPLVFADVQSASTDLGSLALTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATMSFQLPYSHSVCEIPT*
Ga0104988_1029614	F009057	N/A	MPTFRKFAFPDGATADKALKDLQPLDFAVQVGEIDKAVCVDILFHDTCPEALAAFVVWPAPCGVHCFSGWEEQYTKDYQEFATPQSK*
Ga0104988_1029616	F007748	N/A	VNLLETTIIGTVSAIVGGGVAWITKGKFTADSLQVKQAQAVLAMWQETAEAQKKELTELRNEIVSLRERIELLENTIHQLEAENATLKSQR*
Ga0104988_1029619	F011581	AGG	MTYHSTRPAKALTNALERLMIAISPQDLEQNHALLCEYRRACELLGYDPAKAQWAGIHEVSASQLPKDEDHTVCYYPLLNPEE*
Ga0104988_102967	F006105	AGG	MIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNVSTDYTLLKSANLSNYTERYDKFSLAVGSIETGSYKYEVYDTSSTVSAAVAVVETGLAYVQVVSLTFNTYANTITYQPFYGAGIFDFTFDQTFA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10296

Overview

Ecosystem & Geography

Associated Families

Sequences