Scaffold Ga0104988_10274

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10274
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12747
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F008130	Metagenome	338	N
F044491	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1027417	F008130	N/A	MPYGGNTDDKGDAMADAKTYIYEVYTTHLDSQQMVLVQIFRDPETDKVLHAQIAFKDAIGDSWQTPYQLEKK*
Ga0104988_1027419	F000722	N/A	MTDNQYPETGITEETRQMYPDTYSDKLGKVYNEMINDIVRPNYVARPEPPDHSILLDELTMMFDAHMTIGGEQNRFNASVIRAAI
Ga0104988_102744	F044491	AGGCGG	MSTYTTASKQLISNYACISTLEPTDIALGENITVAGLASPFNGTFKVLDLPQYEFTGVDSTTGEFQFDVNVPRVNQIIYAATGSDVEYVITYAGTVTYTQLCTWISVADLVTYLGVTISNPSDDYTLATQATNASNVFCYRRRQESGYHDGLSTSPGTDATLGTLMYGAALWRSRGSIETAYAAFDTMGTPTQQSLTPIVKQLLGIPRPAVA*