Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10271 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10271 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	12688
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (88.57%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

12688

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (88.57%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016388	Metagenome / Metatranscriptome	247	N
F062727	Metagenome / Metatranscriptome	130	Y
F066600	Metagenome / Metatranscriptome	126	Y
F082609	Metagenome	113	N
F098936	Metagenome	103	N
F102851	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_102711	F102851	N/A	SPEVLAAITETQAEQLFKQIEVEELTEEQLEAFTEAIQQAPTKIKKAFEKTINIFGSQFENYVPTGSNIPVKTRRTLVAAGALIAAIPSTRMRRQ*
Ga0104988_1027120	F082609	GAGG	MIKQPTVHHYILTYDADNELWYHDVETEREKFSDGATLNIETGATSWGYLGDGQYAPNECELNEQITRAVRELNQNNRQVPFTVEECENIIADLEDYKFAEIDDETDRTYIPYPPV*
Ga0104988_1027123	F098936	GGA	METKQPTITDTELALLKSFTQGYLSALVTHDRAYEGFDEFYSYNDKWDINIHAVGQKPRTIYAVAYPQTVDADGYLTTDTSNWVEIGQYDMNGIPKRKATAQ*
Ga0104988_1027129	F066600	AGGGGG	MPRTKQLNTKAIIKAYEAEAKRAERNAKAYRGDSLEQYWLTHACKVRQYKQLAEQETA*
Ga0104988_102713	F016388	AGGA	MNSAIAKALDLGQRLVSLFIASALPIITGGAILGVDVVKSAGVAGLTALFGVVQKLAAASVDGELSAEEISAAFGTAKKKK*
Ga0104988_102715	F062727	GAG	MDGGWALILSAVVTAVGGVIVTVIAQFRKENQEDHAVVAGMLQHVFSSVGRVEVKVDKVVEDLEGHIKEHKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10271

Overview

Ecosystem & Geography

Associated Families

Sequences