Scaffold Ga0104988_10259

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10259
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12517
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (72.41%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F009140	Metagenome / Metatranscriptome	322	Y
F011742	Metagenome	287	N
F012211	Metagenome / Metatranscriptome	282	N
F019121	Metagenome	231	Y
F021243	Metagenome	219	Y
F034503	Metagenome	174	Y
F040534	Metagenome / Metatranscriptome	161	N
F046258	Metagenome	151	Y
F071155	Metagenome / Metatranscriptome	122	Y
F097199	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_102591	F021243	AGGAG	MKEPEDEAFEELALKQGQWSHTSGWRKKQIAHMDVHSHPAEFVHLTRNDTLEEVAREIEQFAGPFGRDTVQS
Ga0104988_1025910	F009140	N/A	MQGIGVFPSAKNYKTHHTEVFGDKQMRLNQTHRTILKRLSGGPRSMLDMTHSATDNNAVSYHYAKYLPELERFGYVINHDEKWHLTEYGRMEMNRAISGAAMRIESGSIREPYDGKELRRNVFRRGCYDFLKYPSRFGDNLFYHKGAQA*
Ga0104988_1025911	F040534	AGGAG	MNTDKSGEGRILSLSTLGEPMSEEEFEDKMNTYELDQQYAEYIMERRNVGNGEILIRFMERGELYEDFKEHIMWGGK*
Ga0104988_1025916	F034503	AGGA	MNKDEAHHLLNKRKQGLAVPLYLVNRALVVSGDISMACSPCQATRVEGSGMAQGEGVRELFYPFMARDNSGFNQRNESTQ*
Ga0104988_1025917	F097199	N/A	MSEALNRVIEEQQKRIDDLLEGNKNLIERSSRVFKQNEELFEAVAKLIDFRMDYDKWEDKQREAYGSLRHGVRMQMIEAGYCVTCYNFMVHCECDE*
Ga0104988_1025918	F071155	GAG	MRHDIDWKKVHCKVGQRVPVYPFNKEPFIGEVKRIKMNRFGRVSYVIDDKEVMAEELLPAKNQTKLKMRVNQ*
Ga0104988_102592	F011742	AGGAG	MQTIEFVPFDWVDDDFNPEIDRIEVDYQWHEGDDSVGLISYCEKTVKWMRFNLEIKDITDELSYADLAYLKHEIQRNDKEIADERT*
Ga0104988_1025921	F002707	GAGG	MTQSQALTKALVLAIIAPDDDKAAQASTLAMQIAQGLTKTQVNRCKAQALKMIGENP*
Ga0104988_1025923	F019121	GGA	MAYTLKKSIVGLTFEDIKRIYDNNPNMTLRELSNLTGYAIPFLKKLLLGGL*
Ga0104988_102598	F046258	GGAG	MKHLTIAIKRVLSYFEIVISQPSLPILLRDKMPARMTLPTLAITDPKFVYKNASCTDITQTFQKAKDERLQRLRNDADSNRTKDQSIGEQVSKQKLRRVHG*
Ga0104988_102599	F012211	AGGAG	MPTDEEQFKYECWAIVQELDPDDIADAIADSVALVEAIKANHAEDVASIVMNRVELKVRRRAELRVFDVVKTQWIDDIEELQHYRNLRIERVQKALDERKIMEAKMDAPFKEMFDE*