Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10248 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10248 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	12380
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (31.82%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

12380

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (31.82%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005024	Metagenome / Metatranscriptome	414	Y
F006107	Metagenome / Metatranscriptome	381	N
F009398	Metagenome / Metatranscriptome	318	N
F015720	Metagenome / Metatranscriptome	252	Y
F018171	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1024812	F018171	N/A	MANTQGSKYIFGSPATLELYDAAGALVVTGYVSPDMESYDITHEADTEEVRNSSGEVVGHIGYNNRLTLTVNFIPANTTSVANAKLSAALPDVNGTCIISGAPVIEIGGYIDAINAVTGNRWIYAGGGSIKTTATGKATGTITLKRYANITVTGAATSL*
Ga0104988_1024813	F006107	GGA	MNAVSLRAEKAVADYLAAADWSGSGAGVPTCLTSYSRGLYDDPDLEDVMPNFPRLVVSTNSARPVQRVDLTNEVEVSVELQLSADDTDEAAVLTTVQVLDNRILPLFDDSGASALDAPTNDASGPFTAQFAAPLDFGAASISNRSRTFTRTFTLYCSATL*
Ga0104988_1024814	F005024	GAGG	MTVDSSRFDAAMKAYLLSTSRDLHKAINARFFFLMVRLFVLVPPKSPGQERRRIADYLGKPLGDVNRKSKKTGKRIGKSRLLRRVHLIAQAREAKAGRRGLYGEEMKAAASALMRKAIGSVGYLRSGVVKVIRIYNRGFTQFQSPKWKPLSKPAGYKAPKKTNAALVALANQYGLPEENVAVHKGTKARGIQAVPGFNPTASVVMTAGVADNQYNRVSTIYNTAMQKAMDDELVELTSHMTEAMLANGKVLEDNGIAIK*
Ga0104988_1024815	F009398	N/A	MTTIGSSLQQGMTVLQQMLGAPMFIWEGSSIRCIPAAVTDANTPIAGGFQDNVASRILVKFSDWKTFDSTLVSMDTTLYTLDQGTEFSRLQREDNGFIFLENTDRIALTFCKPRPVVGRTLVYQGRTLRIMSCRVDASGAYYSLELGAKTR*
Ga0104988_1024818	F015720	N/A	MKNTKTTLAGIGAILVAIGGAMKALFDGDPSTNLDITTTIAAVTAGIGLIWAKDAKDADPKP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10248

Overview

Ecosystem & Geography

Associated Families

Sequences