Scaffold Ga0104988_10237

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10237
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12305
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019450	Metagenome / Metatranscriptome	229	Y
F037622	Metagenome	167	N
F065530	Metagenome / Metatranscriptome	127	Y
F069832	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1023712	F019450	GGAGG	MTTYAVYNSQGQFFARFITYRRALAWAIRNGMEWTAQIRKERENTI*
Ga0104988_1023715	F069832	N/A	MEDLPPDKAKNGRPTAYSEEIATKVIDAVRSGLTLERAAELVGMNPGTVQGWTTKRPTFGRLIKKARREHEVSLLRSIELAGEKSWQARAWLAERVHGYAQPSARLQVSADVQHNAGAGFAKLIAGLASRRAEKKAQVIEAEGVKAIEQPKSKYNSYCATNDSQHIVAPTPGQNEEGHRRSRHVRMKRRKPRLKAIDTTTPPAQPPAAI*
Ga0104988_1023718	F065530	N/A	VIGAILNIIASVLRLIPGWREKRIDKIEGEWRNNHDAIDRDLGPQPWWVRQYNESVHEDKRSGDGSDA*
Ga0104988_102379	F037622	AGGAG	MTKEQIIKEYMSQMGRKGGSVTGPTKARKLSREHYQTVAQAQRERWQKWRLENGRVAIKRER*