Scaffold Ga0104988_10230

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10230
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12259
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008423	Metagenome	333	Y
F021090	Metagenome	220	Y
F024312	Metagenome	206	N
F038998	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1023021	F021090	N/A	MITINQEQIKELEAFINTIPTAYGLPLLQFLGKLNAEQNPPSEVKED*
Ga0104988_102304	F038998	N/A	MIVLNICKEEINWKEAKNGKNYANIATDFLKQPDDKGNTHTVWNNQSIEERAEKAKKNYCGRGKQVSYNAPTAKKEFAVNQQEAEPHSTDDLPF*
Ga0104988_102306	F024312	N/A	MTPLKRLWDLREEVKFWNYKVETSYPQNAAEMIYKLNAAKYKLKLHKQLHFPELLDQPKRDYVPYQMLADKFEVFENYLND*
Ga0104988_102309	F008423	N/A	MSKLIYQEKQLKLHKRATILLQLLKEAQGRQNLFEADLTEWRRGLDDTRTMISEEDLLIKIARMNDVQRRILKSYHFLILDLYTLTEEFMLPINLLHF*