Scaffold Ga0104988_10226

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10226
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12226
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (76.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008808	Metagenome	327	Y
F009064	Metagenome / Metatranscriptome	323	Y
F018684	Metagenome / Metatranscriptome	233	Y
F050167	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1022619	F008808	AGAAGG	MSKDIPPCPECGERFENVFEATDHLLEDDEEFDPALVLPNGARLMIGSLLRCLYKYADKPEQIKSITQSTYMTLFTAETQPEAIKDIVEEMIVESQMMEIDDEIKQLLEGGK*
Ga0104988_1022623	F009064	GAG	MLAVERWLAKFGSTDQPNYAQGKADGKLEPEINANIRANICEWAVAKHYNLAWNNPWYPNVLHKKRHSLPDVGNNVEVRSIRTQDSIPFWRKDEGKVIIGTKCLDLEYFSEVEIFGAAYPEEFTKPEYYDSYINGWRIPISGFTHE*
Ga0104988_1022626	F018684	GAG	MANEDWKLQVSYKTPSGDMINVRANTADELSVLLEGIGDYSPQIAATQQKVVGAYNLSPLSTSSSTTNTKPSNYSAPTPVSPASGTAAPVCKHGGRIWREGISKASGKPYAFWSCPSPQGTPDQCKPVN*
Ga0104988_102266	F050167	AGG	MTTTTAEQIENYLASISLTLADLSDELATIQFDLEDANGYEPRGTILKAIPTQSRFKPKSMWVSLGNGKYQHLTGEKGLIAKHSRLDGYTSVVFRP*