Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10207 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10207 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	11953
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (18.18%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

11953

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (18.18%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009003	Metagenome / Metatranscriptome	324	Y
F026004	Metagenome	199	Y
F036096	Metagenome	170	Y
F037731	Metagenome	167	N
F042339	Metagenome	158	Y
F069698	Metagenome	123	N
F079655	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1020710	F009003	AGGAGG	MTAKEKAWQLYSNYFDIIENGKQEGNLVEAHIKAINAALYCVDEALTNAPDDIVNDFEGTGEYYSVKAYYMHVKNEILKLNEGKNIKVSRHPEAGTD*
Ga0104988_1020711	F079655	N/A	MEQQNKKETAIRTLSKSLRRRFQGASVNISWVELDAFMMKAQTREMTNLINSYNEGYTDCKAGLPNRTQDEKN*
Ga0104988_1020713	F036096	N/A	MKATLTFDLTDDQHSFDCAINGKKYYDILDEIRQHLRSLEKYQDLTEEQYEIIGKVREWLHTELLDAGIADKF*
Ga0104988_1020716	F069698	N/A	MEFESRDVITIIGAVVSLTGLYYALKRDVVKVSSALGKVESYHKREVTMLAESIKETKDEFNNKLNVMKDEQNKAIDKLEAKIDVIASQNMTISNNLAELAGYIRGTK*
Ga0104988_1020717	F042339	N/A	MYWYETAQEIDSLYKMERAKVTYYAKITGIQAASYETLAEIYKNKQSIEKAISTEKDNEISQLKKRNRRLIISNTALTLGITGLAFSTIYFAIL*
Ga0104988_1020718	F026004	N/A	MGKITKLAIGLSITILALAVIFSVRTCNRPVTNPAVKRLQDVNDSLYQIIQMNNAKTDSLFAKLDSLQLYQDTIVERQEITNEIYRNETYNIISSTPSDADSRFRATLRKSDSLLKAGFYSRTYNLRSSAFQLELQ*
Ga0104988_1020720	F037731	GAG	MAAKKQTNPKPNKVNLKGIRYKLELFDGFWSIPLAFLVFAISGTLSVAYFGDALISTEYIQYVVLAAMVMVVANFVVFLGIRFNFRALQREIYNKEVKYEINTYLTTWQKVVLYLLLYAFYFAAFLYILQMLLTATA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10207

Overview

Ecosystem & Geography

Associated Families

Sequences