Scaffold Ga0104988_10181

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10181
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11503
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F006658	Metagenome / Metatranscriptome	367	Y
F034175	Metagenome	175	Y
F093779	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1018112	F034175	N/A	MIEYPSNGNEMIYKPPVEARVLKLEDENVGMTNELYELNVDIDMLKERIKTLENLILGDGK*
Ga0104988_1018119	F093779	GGAG	MKVEITQDITGTGYYHWILYTGPEHIDEYTGNCYTLGECFELIVKWKTLSALNYYE*
Ga0104988_1018125	F000919	AGGAGG	MRFRDVEFRWSKFNNKYELVRWYKDNNDKEFCYVVAFFDETKDGDYDLRTVGNRFFEDKDAWIVGKHAIEFLNAMSYELQKEKELE*
Ga0104988_101819	F006658	AGGAGG	MDNKAKEPFGFNEVSTGELIDSPKFQKNTFLERLNSPEMIKMREDLAKAHEDSIKKSVGWYHMLSAEDKYRAVEAFCYIICKAEREGTSHRGLMSELGVYPEAFFIDGLMDIHNALYVEYQEQDSRNWKEIKEDMKTLENIVDK*