Scaffold Ga0104988_10167

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10167
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11429
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (82.14%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004231	Metagenome	447	Y
F014489	Metagenome	262	N
F015570	Metagenome	253	Y
F029673	Metagenome	187	N
F032957	Metagenome	178	Y
F047564	Metagenome	149	Y
F092060	Metagenome	107	Y
F093496	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1016716	F047564	N/A	MQEPSSTESEKATPCPWLSQLKPYNAQETFLEYLINHYALMAMNPATIEQARHRTAELKKDFPTLGISIANRIKELKNEMP*
Ga0104988_1016720	F014489	AGGAG	MEMKQQHYAILKRLQHGASSLKRFTDKDGEVGNQGFHYLRYLNDLQNFGYALEIGDVWHITGFGVAKLAEQTPRVSKDRVAAGTTTETYDGADLKQSGIRVGAFDFLKYPSKFGDNLVYPRVSL*
Ga0104988_1016721	F004231	AGGAG	MMSVKPKDFQHEICVYLEGIGECLVCFDILTPSDELDPDHSDSYEIDFAVFDEQDKHITYDISRKQYNHCENKAMDEMLDITTQWHKEWESV*
Ga0104988_1016723	F029673	N/A	MGKTRMTKAEMIQHLRMVAVSENTITGMSNAFDLGAEHERDVVSSIIFNMVKDQHLAQNIVDTIRVRE*
Ga0104988_1016724	F015570	GAG	MNDKLDQAFDELEFNVNVTEEMRKAKYLSEQREVATGVTDGTIQRALVRDLTENLRTLPTSNDPLLLRNDVLEEVAVELAKLPFGDTAASYAAFVRQMKR*
Ga0104988_1016728	F032957	AGGAG	MDDFNPTTRMFSRTLEEAYPKEYVNEGIFEGPYYSAPHINDVWVLFGLITVISMVSVALWRYF*
Ga0104988_101677	F092060	N/A	MGVNMKLIAKKQGYEIWAKFDHDANVYELFFDQECETYTGWAVDSLKDALSASKHILDEGTARA*
Ga0104988_101678	F093496	AGGAG	MTFIQSAIDNFPEDQAHIDAEFALDMFKTEGADYYHQWLIKERSCVIHNVFDDDEAQIKRYIDKFNELTASHTNFYM*