Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10157 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10157 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	11326
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (9.52%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11326

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (9.52%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000847	Metagenome / Metatranscriptome	861	N
F001129	Metagenome / Metatranscriptome	768	Y
F003459	Metagenome	485	N
F007748	Metagenome / Metatranscriptome	345	N
F011581	Metagenome / Metatranscriptome	289	N
F088549	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1015710	F011581	AGG	MTYHSTRPAKALTNALERLMIAISPTDLEQNHALLCEYRRACELLGYDPAKSQWAGINEVSASQLPTEQDHTVCYYPLLNPEE*
Ga0104988_1015713	F007748	N/A	VNLIETTIIGTVSAIVGGGVAWITKGKFTADSLQVKQAQAVLAMWQSTAEAQHKELTELRNELVVLRQRIESLENTIQALEAENANLKSLQ*
Ga0104988_1015715	F088549	N/A	MATFRKYEFAVYADFRTIYDAEASPNTCVELGHVNPDNPKAYCVDILWEGEEPSHWVRHQVWPKPCGVHSFLGWDAQYEADYQEFATPPK*
Ga0104988_1015718	F001129	N/A	MPTPILQQMLGQGGTMEFVDAAVTGKNYDFIVVNVAATFTTLTGTGSEDLRSAYNLANKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL*
Ga0104988_1015719	F000847	N/A	MSWIKIKQALLALANAHPQVNSFGTGDPLAVGTDNTINLRTPSRERIVYPLVFADVQSATTDLGTLNLTVGVYFSDRVESIATMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATMSFQLPYSHSICEIPT*
Ga0104988_101575	F003459	N/A	MNHLVTIPKSDISKQDIADIAAGLIHRINEGEVNPIAAHVRLKAVVKALEQVLKATEDIVRDEALKHGKTFSAFGAEIQIKEGALTPDYTHDQVWSDLQGSMKAREELLKMAFRNAGKATVYDEATGEAVPVCPAKGTKPSIAVTFKTT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10157

Overview

Ecosystem & Geography

Associated Families

Sequences