Scaffold Ga0104988_10142

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10142
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11215
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002343	Metagenome / Metatranscriptome	568	Y
F003785	Metagenome / Metatranscriptome	468	Y
F006062	Metagenome	382	Y
F079804	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1014215	F003785	N/A	MTSVQELEVTVTSHIDVCAVRYEAIHARLKRLENLLMKVGGTIILILLTAFGTVTMMLLEAVK*
Ga0104988_1014217	F002343	AGGAG	MSDITLTLTLEEAVALTNLVGSLPTAQGAYPLFQKLKSQVEPLLPKQEEVKQ*
Ga0104988_101422	F079804	GAGG	VDEDTWQQQRECEERRYYTEPVTLTWTQADIDRHNELRRELKQIIEEYKKCQNF*
Ga0104988_101428	F006062	AGG	MKRIFPKGTRSDAMAAAVVRMVANLDPLKTWAVEVTEWRRPRTNQQNKFLWGVVYPAIIEGGGEALRGWTRDDLHDYFLGECFGWETLEGFGKKRLRPLRRSSALNKQEFSDYLLFLETKCMDMGIVIPEPSYEPA*