Scaffold Ga0104988_10141

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10141
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11208
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (18.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043476	Metagenome	156	N
F067885	Metagenome	125	N
F075872	Metagenome	118	N
F090300	Metagenome	108	N
F090574	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1014118	F075872	N/A	MTRERSFKHYYPIPHNGGFIEPIIHIEYEAHDWGNEHAGSIDVIDAWVSSFKYIKLDIATPEVKVGEVAPVLFEWKKAVMTDSEAESAQAWLDQTPLDFFHDAAFENECEEWQEPPLSLQP*
Ga0104988_1014120	F090574	N/A	MTPYERDEAMMSLSHHNMQLGKVVTLVGQLFQNVSPEVSARLYPVWAEAYRSALQDMQNAYNLGVTEERTKCVAMMSKLNPTNL*
Ga0104988_1014122	F043476	AGGAGG	MLTLPTNIDRAEIEAFVNHVTAEVMDGNVDPLSVHIRCKAVVKALEAIIERTEELAKDTAATYGKGEFKFHGASVQLREPRDVPDFNQDPVCVELADRLKARHELVKTAFKMADTAAIVDPNTGEVVPVVPVKPAKTTLTVTFR*
Ga0104988_101417	F067885	GGA	MTLDEAMQVLSVKHKLDGYYASQTMSLSPGEVSMLENVANANGYGRTNWWCGSCAVSRLQEMMADAMDARARFATE*
Ga0104988_101418	F090300	N/A	MNRYNVLPAWYYRYAKCKPLTCLTCLAFWWGVVLTITASSLPWMLAIPIGLSAAGLTVLIIKLSEK*