Scaffold Ga0104988_10122

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10122
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11019
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F003112	Metagenome / Metatranscriptome	506	N
F010603	Metagenome / Metatranscriptome	301	Y
F025458	Metagenome / Metatranscriptome	201	Y
F039992	Metagenome / Metatranscriptome	162	N
F060708	Metagenome / Metatranscriptome	132	N
F081071	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1012210	F039992	GGAGG	VSLDEVADLKDRVASVSERLARMEERQVTLYHMVERSLASFGDLGNRVTAIESLKTKMLLVAAGLGAIVSFAWDFFKSKLINGG*
Ga0104988_1012211	F003112	N/A	MIKRIATWLTNLSLRFLMTRSEYACFKEALKFATENNQMVKETKYIGKVKHLLSVNRSIKRIVEEGRNRDEVTDAVVHLAVALKYLEGRGRES*
Ga0104988_1012212	F025458	GAGG	MSLKQEIFINGVYSHTEDTRTIDEAHEENLTRIRELITAKIVEAGYDEVWQRNAGLGVLTNLEVEQGREFIANLRTAYHEYKARLLAATRDEADGIQFNLP*
Ga0104988_1012216	F010603	AGGAG	MANEFVRSQRKAKGRALRFDSQGFTNVFEITASSSGGTVNTVATAPASLNVTLNGTSYRIALHS*
Ga0104988_1012217	F060708	N/A	PARLALVGVGEPLDNPLGVNQTNLMKGYYRQEQKLGSRFKSQYTPDSIKRAALRRQKNG*
Ga0104988_101224	F081071	GAGG	MTPMEYIELSGVPESKWPTFKEWFNWHEKLDLVGVAKDGDNIAGVAIARCLNDGQDPVHYKHTEDGDNVFVDLTVTSTDGISNALSRKALKCLLSILWDRFGPRRRITFKRNGAYKEYDYLKFMRKAMA*
Ga0104988_101226	F000635	GGAGG	MTLSEIAQFAGEKVGKTDSDTLTFLQKAASLAYRRVWNFAPWRESVTSSTYSVGTNRTITLGSNVETPLSVSFDKSEVDPIDLATIISQDADLLEDTRTGDPVLYHFTGRNTSGIAQLDLYPRLATAGTESLRVVEKLKCLTRTNIVVDFPPSTEALNDELRLPHVHQVILALTHADALERERQYAKAQAVVQSANADLAAMANYELSQVGGVKQITPVSLGDLMTEEITAA*