Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10120 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10120 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	10988
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (64.71%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

10988

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (64.71%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F004010	Metagenome / Metatranscriptome	457	Y
F007467	Metagenome / Metatranscriptome	350	Y
F021063	Metagenome / Metatranscriptome	220	N
F022371	Metagenome / Metatranscriptome	214	Y
F065527	Metagenome / Metatranscriptome	127	N
F069828	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1012011	F069828	N/A	MKRAVVTMAFGAEWEKILELTHPRIDDFAKRNKMDFLVMNRSVMDPKDYNKSMIAHIIVGKKYDQIIYIDCDCLVTKDCDDFANPAEAGNGGFIAFDEGDYLDRKDGMKKLAAEFGGIITPTYYFNFGVFAMTRKHLGLLTLPPLGVVPNHFGMQTWANIQAHFWDIPLSGMDPAYNCMTSVEQHYGLDRHKDAMIIHYAGQSGDMAKLAEQIKADDAKLVELGR*
Ga0104988_1012013	F021063	N/A	MRSTHLTKGNYDERLQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKTGVIAWWCRASGVAIDNRTLMRKIRENDYVLPT*
Ga0104988_1012014	F022371	GGA	MFCLLDIAGVVWVISSFVLYSSLILSAIYCAGYLIFKLIEIIRKELDL*
Ga0104988_1012017	F004010	AGGAGG	MPLGKDVSKNMSELAADNRKKGSERGAGGKARSRQQMIAIALSAAGKSKPRKFRMRSGS*
Ga0104988_101203	F065527	GAG	MKAIITTTLTAMLMASGLAEDEDEIGIGDFAGGVLGKSAIITGRNTAVTSDGKFIYSNGRGFATSGGYYGANGKQVFGNGKLVVKSGSFFYGSSSSWKNGNSYFDGTKSSWITGKQRISD
Ga0104988_101205	F007467	GAG	MTEKEAWAKFEKGLKDTQSFDEAVAWVKKNKKIVEKLTMLAMIRRFNEDISRANRTWRN*
Ga0104988_101209	F002009	GGA	MARGVAGSSLSESCQMTAPTIQEMGNAAQEIVWRVMGKGSDKSAYGDWLVKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRSLFVLAQIRKEVPRL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10120

Overview

Ecosystem & Geography

Associated Families

Sequences