Scaffold Ga0104988_10117

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10117
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10944
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006740	Metagenome	365	Y
F057944	Metagenome	135	N
F058809	Metagenome	134	N
F060707	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1011710	F058809	AGGA	VFDPLTIGLAFKAMQAAYDGISYCCEALSEGKVAIQKVKKATDDIKTITNDAKTIWSFFSGFFGGKSKDKPLPTAEAKSVVKKKEQYTTHIPNESEIVQQFIGHLGAFFRHHKELTEYVEIKYEEVFASADPDPETILELSVYKNELDQSYVKLSGMMRGASVPYQLGPLWENYNQIYSKVQAEQQKRKEQIRIRRQIESYKRERFRQEKIELSMGLFLVLIIVSWLYAVWINSFTEGF*
Ga0104988_1011717	F060707	GGAG	MRKPIGLVVPIQIETLEEKEVFSAMEQSSVRKEAIRHPTKEAKLIAEVALLTEVVRLLSKRVDELEKKYEKTTN*
Ga0104988_1011718	F057944	AGGAG	MNDDLLPTGRMFPRTLQEAWPKDYVNEDIFTGPYRDPQIGDFTILCALIAIVWFFFYMFTRYIWS*
Ga0104988_1011719	F006740	GGAG	MPTFESWSHENLAKFAQESYIKLQEQQDYIQQLQNDLKDAINAYRSLIK*