Scaffold Ga0104988_10109

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10109
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10879
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (62.50%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F004010	Metagenome / Metatranscriptome	457	Y
F007467	Metagenome / Metatranscriptome	350	Y
F020665	Metagenome / Metatranscriptome	222	Y
F021063	Metagenome / Metatranscriptome	220	N
F022371	Metagenome / Metatranscriptome	214	Y
F041081	Metagenome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1010910	F041081	AGGA	MIMEDVSVDFEFNGEKYTAYGNAEIDTITEDIGPVGYREHCFAEVVNNVTMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDSRQ*
Ga0104988_1010913	F003304	GGA	MEERKMKQALVTQSFGEEWKKIIDLTRPRMEAYCKRHSVDFILIDKPLTHPAQYSKSAIGNIMATKGYEQVTFVDADVLIASDCPNLGDDAGVFCAFDEGAYLDRKPDMVKLAAAFGGVIEPKFYVNTGVFVVHTKAVGVLSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRHKDAMIIHYAGQSNDLVKLSNQIQSDEAKLVELGR*
Ga0104988_1010914	F021063	GGAG	VRSTQLCRGDYDDRLQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKTGVVSWWCRASGVQIDNRTLLRKLKENDYALPT*
Ga0104988_1010915	F022371	AGGA	MLCLLDLAGVVWVISWFLLYSSLTLSAIYCAGYIILKLIDYIRKELDL*
Ga0104988_1010916	F020665	AGGA	MKKKRNKITLVKTSEQTAVRVIVDIDDDLYEALAKAGRHHLAKDKMACFEYALNKALLELCEELK*
Ga0104988_1010919	F004010	AGGAG	MPLGKDVSKNMHELAMDNRKKGSERGAGGKPRSREQMIAIALSAAGKSKPRKFRMRSGS*
Ga0104988_1010920	F002826	N/A	MQVEAKDRLKWAREILSIARDKLVVERDRATHGHAIDMIQIITMVDAASLVCKEVMGDE*
Ga0104988_101095	F007467	N/A	VNEKEAWAKFEAGLKDAESFDEAVAWVKKNKKIVEKLTMMAMIRRFNEDISYANKTWRN*