Scaffold Ga0104988_10091

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10091
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10688
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F005528	Metagenome	397	Y
F006986	Metagenome	360	Y
F019644	Metagenome	228	N
F021759	Metagenome	217	N
F025023	Metagenome / Metatranscriptome	203	N
F037220	Metagenome / Metatranscriptome	168	N
F040082	Metagenome	162	N
F058107	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_100911	F003378	GGAG	MVEEVKIKQNATMAKFFDLGQRLFSLFLANALPAVTTGAVIGISVGKSAIMAGAMAVIKVVSALAEASTDGELSSEEIKAAFGKKK*
Ga0104988_1009110	F037220	GAG	MSDEQDLLAGGGPKLPSLKFEKIGDVHSGIVTDVKKLEDRDPAGVAKTWPNGDPRFVYVITLKTDKNGDANLWARGAMITAIREAAKQASVTELTGNRISVKYSSDGEKKAGFNAPKLFAAKVEKIATDDRW*
Ga0104988_1009113	F040082	AGGA	MTGDTFAMSQEIVELQTRVAELSVALERVTEQRDDAIDAAESLHQELEACRDRIKSLGGQLDRLRIHLQQGIEL*
Ga0104988_1009114	F058107	AGGA	VITIGTDSFIVCQICDGEVRLDNKRIAGCLCDPDAPTWVGVEPNGRLLAFSQSKYEIVTDLGPRHNYD*
Ga0104988_1009116	F019644	AGAAG	MSSEGSFDDRIKYFIESEVDADNVCTAYVLVATIQNFKTTEEKFFTICPPEQVTSTTIGLLESASAAEKLRIARQLTQDD*
Ga0104988_100913	F021759	AGAAGG	MDAGLATVLAAAVATFGGIVVALMQLKGLREENKHDHAVVQKRLDTVIDMVGKQGAKLTSHLDWHLTKEPTKDLPKVKQVATRKKK*
Ga0104988_100914	F006986	N/A	VTVVLVTWHDAHSGAESWINIKDLDTEPAEVQSVGFLLATSDGGKPDHVTLYQSRNEDSVDHVLHIPVGMVKHIKVLMDLETNSSDR*
Ga0104988_100915	F005528	N/A	MSLGIAQAVSAPAQPSVAVIALQPLWQADRLDPIQPIRYRHGDVSWLPNLAKEAGWPDQAIPQLTQIVLRESGGCPNRRGGDMVDKDCNITGVSEWNHRSDTGLLQINGVNYDLSRNKWAAICRELNICTQAPLLDPLTNLKAGLVLYNLLGFEPWNPCNWRVCKVSTTSLP*
Ga0104988_100919	F025023	AGAAGG	MTDTFEGRMMDVGVDRTCVLQLQSDFDSLRPHQRAMVKKIATECNEYGHSISLDSLKSHRRYQIGRGLVDLIMSDNCDELLITSLCHSIQGVLFKTAGGAIGHLDAKCAEQFAVICRAIRWDEQDIVWNTSTDSFGFPKQKASK*