Scaffold Ga0104988_10086

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10086
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10645
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (37.84%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004208	Metagenome / Metatranscriptome	448	Y
F013631	Metagenome / Metatranscriptome	269	Y
F053990	Metagenome / Metatranscriptome	140	Y
F073458	Metagenome / Metatranscriptome	120	Y
F093764	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1008612	F093764	N/A	MARRSKSASRQMVESLKDQLTEYFRENVFDDYDYEDLTGSELFEALVETFKELENDLKEELKPIQYVLNKLDPEDSETQVLNG*
Ga0104988_1008613	F073458	N/A	MSAKLIALAAEIVDTNPAGAQLIVNLTNAETGAEIVEALDNYDSAVLENHTESVETEGEVTLTDADGVVTSV*
Ga0104988_1008614	F053990	GGAGG	MIDTCVLHDDYEDFAEKYLGIDYDDYVTFELGLPDEDELEIEYPVGI*
Ga0104988_100862	F013631	AGGAG	MIASEVFHYTTSRWDWIDCNVNQMWIEEIEESPDCYKYVAVAYNPRKDASMVMSEPRCYADTLNWVRSWCHSFCILPEFSVAV*
Ga0104988_1008627	F004208	GAG	MTYSLNQEAKAFSYTREELFNTITNIVAHPHKTITEHDQSRALAIMVVFDDYFSNYTESDNNGGYCVYERDATDFTDFVRFKLGIDDYDYVNVDEVLK*