Scaffold Ga0104988_10079

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10079
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10584
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051706	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1007912	F051706	AGG	VAEKNVGFYSPALAKRIRDNSFAWERERATKPVEIRQTVPDPIYFYNASAHTIPAYGCVQMIGMQAIDGQDIIKVDRPFDYTDSVMGPFLFNGPAEVEANGLGTAQWGPIYKAIKDSGTYTTGTRFGPVASSFESAKGCLYTYIGDDDVVENCVRLIACETPLLAIAGGSGISANSSGEVTAKQPASGNWTAGTITYTAWNPTGVAISSNALCLIYPVDAKWVALELC*