Scaffold Ga0104988_10076

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10076
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10571
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F011755	Metagenome	287	Y
F014609	Metagenome	261	Y
F018353	Metagenome	235	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1007611	F001805	AGGA	MATEKIKIQVGEEVLELTGADKETFLADREATTQAQALLETEYKAKQKARQDAIKKLAEVAGLTAEELASIL*
Ga0104988_100762	F011755	N/A	MSNPIYLHFHYDYDNSKEVLCRDAKCYHKRLEDRKKLEEYQDQIDRDLQMKDNLRIIEDSIQDPRIDNYDRY*
Ga0104988_100767	F014609	N/A	MINELIGITGLLITVLVLVIKATAEISKMKSQLFPNGGSSLNDKVTRLQIEVSKISSTISSIESQLGKPKRKTR*
Ga0104988_100768	F018353	N/A	MSKPKSKKQSIELPDVMASELVRIINTAHEDGKLITGFVCVLEVFDGKKKSIKIMANQDMPQHSVFGIINYAAEKYQFTVAPDEDEDDDFYDPEWFHGQ*