Scaffold Ga0104988_10057

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10057
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10426
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003067	Metagenome / Metatranscriptome	509	Y
F007027	Metagenome	359	Y
F012572	Metagenome	279	N
F020906	Metagenome	221	Y
F046904	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1005711	F020906	AGGA	MPTSAQVSVGVTATVLIAATGFDQTVWLHNSGGGVVYIGAANVSTTNGYKLDNGDKMELPVGDNEGLYGVTASGTNTVCVLKQIN*
Ga0104988_100574	F007027	AGGCGG	MSKSIRFDCRSCKKITEQIERIVTDNLPPNVKVLQCKVCSKMSVCLLVTYADV*
Ga0104988_100576	F012572	N/A	MPFRYFNDYIGDTMSDQYELINLQAMTGKLFIEGELAAEYKVEQCDKCAMITQLDQFGYQKSDPVENVIWFCKGCR*
Ga0104988_100578	F046904	AGG	MNSLDFIVVGTLALLMGLFIYAAYEMGYKVGLGEGYLRGRNIAKALRESEAAK*
Ga0104988_100579	F003067	AGG	MSQAQSYVALLLGIATLGGLAAGLVRHLVKYYLSELRPDSNGGHNLRGRVDRIEQRVDKIYEMLLEDRLSK*