Scaffold Ga0104988_10026

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10026
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10184
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017969	Metagenome	237	Y
F027776	Metagenome	193	Y
F056414	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1002610	F056414	AGGAG	MNLTEYQRSQLKAAACFGGDQIDKVAASLQRENPAAFWRDNELSQRNFYHEPMSYGFTIPHRSYVERFIPRRRENEYSLEQRQIMAQNHYLTTTYQIGVGA*
Ga0104988_100267	F017969	AGGAG	MIHVLYIPVLFVCMNGNCEFMQAQTSYKSEQQCRAAVDVQKENLQKMALKGGQMVTLIEGTCITLKGGLL*
Ga0104988_100269	F027776	N/A	MVVCMMNPLEIEIKKTVFAHLPAVGDFGIVDRSDLATMLHTACTEAALAGWARGAEFTQKRMDQECEILRQELKSIQIELDYAKAN*