Scaffold Ga0104988_10005

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10005
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10042
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (85.71%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006618	Metagenome	368	Y
F014714	Metagenome / Metatranscriptome	260	N
F026822	Metagenome	196	Y
F046192	Metagenome	151	Y
F065721	Metagenome / Metatranscriptome	127	Y
F067515	Metagenome	125	Y
F069714	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1000515	F026822	GAGG	MSEPRYLSGDEYAHNGVELDIVKCKECASEYDYAEYHSYTCSDCEDEIIKREKASK*
Ga0104988_1000518	F069714	GGAGG	MNINIKESYMPEYTKVITFECEGEEYMAEVYFGKHCSDYNLYQGNKKLMDKPAWLEKAEQDPEFNFLFFIDEQAWFFEDKERASV*
Ga0104988_1000521	F006618	AGGAG	MSKMKQHLEEQIVISHSEQENTGWKRIIFFEYEGNKYEVNLYWDEFNGYDTYWREPDTTPNWVVEWDEEAHQGMSFEHYLDDLTWEMNK*
Ga0104988_1000523	F065721	AGGAG	MAKYIANENGDWWGVIEGESLYLIDTDNPDITKAMEDEDTNPDQDKFEYFIQKYGTPVYIDMEGIRV*
Ga0104988_1000527	F046192	AGGAGG	MAKQFKTTTLLADEGGKVWVEAQLSEPQVKRIIKAYERAGVSLTAYGSPNQVKAQVEEINAFFANDERSRSFVEAGKLQVVGVGF*
Ga0104988_1000528	F067515	AGG	MKSYYTNETLKSTAQDIIKDFETGGASWEGVALEIARLQLSLKEFKKLGLDIDKGIDYGTWDGSYCANERDITHYDPKCCEHEYESACECCLGDCYDCQNEQNIQLI*
Ga0104988_100054	F014714	AGGTGG	LELKEPELFDYLKEFYYPDLEKSEEFDNWDCISLEDKMFIELKSRKTHYPDLLIEESKYQGLLLAAGIRSLTPWYINATPEGIWGFNLTEIPQPKWEEKWLPMTTEFANRTNRTKLVGFLKLEEGILF*