Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1976 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1976 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	114268
Total Scaffold Genes	160 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (16.25%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

114268

Total Scaffold Genes

160 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (16.25%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025504	Metagenome / Metatranscriptome	201	Y
F031091	Metagenome / Metatranscriptome	183	Y
F031500	Metagenome / Metatranscriptome	182	Y
F032541	Metagenome / Metatranscriptome	179	Y
F053885	Metagenome / Metatranscriptome	140	Y
F057131	Metagenome / Metatranscriptome	136	Y
F066569	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_1976107	F031500	GAG	MISLYSILKEVVQSTPEYEQQVEKIKQQGGKFLGSGDYGAAFSLGGKVVKITTDSEELEDAQKIKGVKTKYFVYIYDVEVISEKLGIITMEDLEQYTADPDEIPIEDIHDEADSLGIYPDLEGPGGSIKMDNVMQDKNGNVKIIDV*
Ga0104986_1976137	F025504	AGG	MKVNNTLKEDRTFNMYQGLVRVGHKDQITASEVADFVRAMPGVTRVTAIDSNEDIHTVVLKVKILSTKPGPVVFDKLKKDTFRLVPNIRKVEVSMKSIEKIE*
Ga0104986_197626	F032541	N/A	MSILNEIKQVLSEITTVNFKGQKFILKVDVNEDPNKKGIKVQFLPATTMAISKQQQDDMAMELAAKLNQGLTALGLTVERDRELKDKTIIGFFIYIEYLDKIIINALSQAAKEPDTQN*
Ga0104986_197635	F031091	GAG	MNKMISVFTCEHTGIVTTYTYRGSNISTGIEKAEFEYPKGYIEQFSKEQKRSSNLPKTKQMFLNPKTGKEVSYYRAKTLGLVK*
Ga0104986_197637	F066569	N/A	MDRAKYIEMRKLGQYDLAWFYQYYLEHKDTNRDTYPFEVFQQAFNMYFQFAGKFIIEYLDKKMEVTKIENEQGNLLYIN*
Ga0104986_197638	F053885	N/A	MDGKVKTPKELMADLNGNYIQVIKKNGKTHDRLFKDPQRAIRAVGGVDNVKYLREVLKEQVNSKYTEVDSLTGTPENEL*
Ga0104986_197683	F057131	N/A	MRNKELFERKLEAFETEVRLVGYHVRRNESDAAFDKVAEILEKIGDLRTLLNTESQD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1976

Overview

Ecosystem & Geography

Associated Families

Sequences