Scaffold Ga0104986_1968

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1968
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 64768
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 80 (86.02%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005025	Metagenome / Metatranscriptome	414	Y
F005234	Metagenome / Metatranscriptome	407	Y
F037636	Metagenome / Metatranscriptome	167	Y
F046909	Metagenome / Metatranscriptome	150	Y
F068756	Metagenome	124	Y
F088524	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_196828	F088524	N/A	MYLRQTKQFYADLERMVRWEMGMPDLWREIVEEYQRLLDQKSEQAARELHEKRMKAWRRQRLKNQILDRVLETVVVVFVVAYLICLMWIINLHHRGRLDTYLS*
Ga0104986_196829	F037636	GGAG	MIKLELPIDAVNMILGALGELPAKTNAMALMLHIKEQADPQVPPETVAEQPLTQ*
Ga0104986_196841	F005025	AGGAG	MDKKQVKAIADTEANKAVKGHESRMHAKGMKKGGPTSMDRKKYGKNLSRAMNQKSGSK*
Ga0104986_196851	F005234	AGGAG	MGMQTDVKSGAAAAGATTTIFNGPARIKGISISYASGATVVLNDGTGGTAMFSFTAPAAAGSIYILFPGEGIKCATNISAVVGASTTAVVFYG*
Ga0104986_19686	F046909	AGG	MKAPPPSKELCLMMAKITYPHDEKLSWTWLFAWGFHEAYVDGWYEGVKL*
Ga0104986_196888	F068756	GGA	MSDFPSGFGLAPIKREGSVADPDEFTWECQCEACALKYQKWKERFDLQQKELRGEK*
Ga0104986_196891	F046909	AGGA	MKAPPGKGACLMMAKITYPRNEELSWKWLLAWGFYEMYVDAWYGGKA*