Scaffold Ga0104986_1967

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1967
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 64756
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 78 (84.78%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000340	Metagenome / Metatranscriptome	1267	Y
F000843	Metagenome / Metatranscriptome	864	Y
F001827	Metagenome / Metatranscriptome	629	Y
F017991	Metagenome / Metatranscriptome	237	Y
F025681	Metagenome / Metatranscriptome	200	Y
F050230	Metagenome / Metatranscriptome	145	N
F057193	Metagenome	136	Y
F082578	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_196715	F000340	AGGGGG	MSMQDILKAVLPILVAAIGWLLSEVGSFNTRLTKIEGAMPALITEQGVPTDSPISAERRHVMKEELYKEIHDLQVRVKLMEERGKH*
Ga0104986_196717	F025681	AGG	MYQEYKAQGMELVDAYGQAKDVVADLSGHLGNFFKAHESLEKHVHEEELKVKKSRDPELSVNQEAFNRVMAVKEMNRLETELRETLVYQAPKELGAIWSEFEAMRDRVKAERAEVQRQELLKQQVAQWRRANIKRKIAEQMTLILAVLFIISWFLWVMILIRMSHTYHGQFSLPSLWCVLC*
Ga0104986_196731	F017991	AGGAG	MDTKQVKRIADKEVKAHEKRLHGMKKGGVTGEAMRKVGRNMARVMNQRGK*
Ga0104986_196740	F001827	GGA	MDNHDIKVMTDGAAVVVGLGGFMSWLPPVVALVGGLLTIVWLSIRIFETDTVKAAIKLFKDKP*
Ga0104986_19675	F082578	N/A	MEKLTEEPEWIFPYDYMAVGESFFIPTLRPAQMMYAADIAAKKARVRVKIYTCDKEGHLGIRVWRTA*
Ga0104986_196754	F050230	AGG	MNVIVPNIDEDIPLPASAFEAMPHLSPHEELEMRARTIKLVADLNDTPIEPTPEHMETAREVAKQMMTNPAHRPEFAKYPNEVMAYLAGMVAQSNCMIVEELSDLKLYVVNKLVSEIENAKDAKARIAAISKLGEVDGVDAFKKRTEMTVKVQPIEEVEKELLQTLETLQEQVLEVEFRESKSE*
Ga0104986_196779	F057193	GGA	MMILETITYRHVLDWIHDTWARSLAAVAMFFIGWAIGQVQTESRIIGDCKYAGAFRVEQQAFMCQRRI*
Ga0104986_19678	F000843	N/A	MALYQVPANLLPQIWPVAAPMLQRAIDLDPDLITIEQVEYAVRTGRTFLLVWDEPDEGITGAVTVDIIDYPRERVAHVNLMGGKGVVRTHVFNEAKEWMRSMGATTTQCWAKGTLVQMYEKMGMTNTHQVMREKL*