Scaffold Ga0104986_1966

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1966
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 63746
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (86.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008750	Metagenome / Metatranscriptome	328	Y
F012327	Metagenome / Metatranscriptome	281	Y
F058795	Metagenome	134	Y
F071151	Metagenome	122	Y
F074585	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_196627	F012327	GGA	MIDKYLEHLSKKIDDKVSQLQEFLADGNAGDYAEYKKACGEVKGLLTARLFISDLQERLKTHDDE*
Ga0104986_196636	F074585	GGAGG	MTNQKQIRAAFWAAHPTLIRRRHRYAWSASDKTAELVHHVDARCAFADYIDQLARDGIISNELAQRVTL*
Ga0104986_196637	F058795	AGG	MNELHPLFAAILRPYTPPEPTPEAIDAAMLADKLADGYNRRNIERAIKLELKNPRD*
Ga0104986_196678	F071151	GAGG	MNCCNANGQCEQGKDCPVRKQRIKEVNDAYANGYKDAQLDDPYEDIADTFKGLLTVMTVVLCVWVVCLLIWGK*
Ga0104986_196683	F008750	N/A	MKKLLALLKEPFKRPTPLEVIAAELAHAHLEKLEAETAVEYAQSIVDYNVNRIARLNARVEEYK*